Rapid Development and Distribution of Statistical Tools for High-Throughput Sequencing Data

Project output from WP10:
Benchmarking Statistical Methods and Experimental Protocols

In this work package we collected publicly available data and data available from collaborating experimental groups to create a benchmarking resource for HTS analysis methods. Our benchmark will be made available as a desktop and web-based application and will help researchers make informed choices over which tools and experimental protocols to use for a particular application.

Benchmarking Links

Differential Splicing Comparison code

Genomic variant detection

DNA methylation protocol and method

Simulated RNA-seq data

Transcript Abundance Estimation code

High-throughput computational biology benchmarking data sets